Introduction
R is a programming language with a focus on statistics and matrices.
Depending on the build for a version and flavour its underlying routines may be accelerated using the Intel MKL, MPI and/or OpenMP, as appropriate. See the documentation for the specific version.
Web Page
Versions
3.3.2
Flavours
1
Architecture
x86_64
Group
module load site-local
Build Details
Compiled with:
- gcc/4.9.3
- intel/mkl/64/2016.3.210
- pixman/0.34.0/1
- qt/4.8.7/1
- libtiff/4.0.3/1
- tk/8.5.13/1
- zlib/1.2.11/1
- libffi/3.2.1/1
- cairo/1.14.2/1
- libjpeg/9a/1
- bzip2/1.0.6/1
- libpng/1.6.28/1
- glib/2.40.0/1
- openjpeg/2.1.2/1
- tcl/8.5.13/1
- curl/7.29.0/1
- jre/1.8.0_121-b13/1
- –with-x
- –with-readline=no
- –enable-R-shlib
- –with-x
- –with-tcltk
- –with-tk-config=/gpfs/apps/tk/8.5.13/1/lib/tkConfig.sh
- –with-tcl-config=/gpfs/apps/tcl/8.5.13/1/lib/tclConfig.sh
- CFLAGS=”-xHost -O3 -I/gpfs/apps/bzip2/1.0.6/1/include”
Serial only.
Example Job Scripts
None yet.
Usage
module load R/3.3.2/1
Status
Passes most, but not all self-tests.
Fails:
- encodings.R
- gct-foot.R
- reg-examples3.R
- reg-IO2.R
- reg-packages.R
- reg-plot-latin1.R
- reg-S4-examples.R
- reg-tests-1a.R
- reg-tests-1b.R
- reg-tests-1c.R
- reg-tests-3.R
- reg-win.R
- test-system.R
2
Architecture
x86_64
Group
module load site-local-development
Build Details
Compiled with:
- gcc/6.3.0
- intel/compiler/64/2016.3.210
- intel/mkl/64/2016.3.210
- pixman/0.34.0/1
- qt/4.8.7/1
- libtiff/4.0.3/1
- tk/8.5.13/1
- zlib/1.2.11/1
- libffi/3.2.1/1
- cairo/1.14.2/1
- libjpeg/9a/1
- bzip2/1.0.6/1
- unzip/6.0/1
- libpng/1.6.28/1
- glib/2.40.0/1
- openjpeg/2.1.2/1
- tcl/8.5.13/1
- curl/7.29.0/1
- jre/1.8.0_121-b13/1
- –with-readline=no
- –enable-R-shlib
- –with-x
- –with-tcltk
- –with-tk-config=/gpfs/apps/tk/8.5.13/1/lib/tkConfig.sh
- –with-tcl-config=/gpfs/apps/tcl/8.5.13/1/lib/tclConfig.sh
- CC=icc
- CXX=icpc
- CFLAGS=’-g -O3 -wd188 -mp -xHost -ip’
- F77=ifort
- F90=ifort
- FLAGS=’-g -O3 -mp -xHost -ip’
- FC=ifort
- FCFLAGS=’-g -O3 -mp -xHost -ip’
- SHLIB_CXXLD=icpc
- MKL_LIB_PATH=${INTEL_MKL_DIR}/lib/intel64
- MKL=’-L/trinity/shared/apps/cv-standard/intel/2016.3.210/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64_lin -lmkl_gf_lp64 -lmkl_sequential -lmkl_core -Wl,–end-group -lpthread -lm -ldl’
- –with-blas=/trinity/shared/apps/cv-standard/intel/2016.3.210/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64_lin/libmkl_blas95_ilp64.a –with-lapack=/trinity/shared/apps/cv-standard/intel/2016.3.210/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64_lin/libmkl_lapack95_ilp64.a
No explicit MPI support.
Example Job Scripts
None yet.
Usage
module load R/3.3.2/2
Status
Passes most, but not all self-tests.
It fails:
- encodings.R
- gct-foot.R
- reg-examples3.R
- reg-IO2.R
- reg-packages.R
- reg-plot-latin1.R
- reg-S4-examples.R
- reg-tests-1a.R
- reg-tests-1b.R
- reg-tests-1c.R
- reg-tests-3.R
- reg-win.R
- test-system.R